PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028237.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 535aa    MW: 60792.7 Da    PI: 4.5163
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028237.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS122.35.7e-381625313374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  + L ++ ea++ g+ +l + ++  l e ++p g+   p++Rla+ + ++     ++              ++++ ++  aa++lf++++P+ +f+h +
  Pbr028237.1 162 HMLKAFGEAMEMGQRKLEEVIMRCLLEKVNPLGQplePLERLAFNLCQGVVDNQQG-----------DYLKQESCKNYEAAFNLFYQIFPFGRFAHYA 248
                  55666666666666666666666666666666642335556666666655555444...........3333334566778999*************** PP

         GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvak.rle 187
                  aN aIleav ++ e+vH++ fdi++G+Q   +++a a+R++    l++T+++   ++       + + eet+++L++ A+++g++++ + ++ +  ++
  Pbr028237.1 249 ANTAILEAVPEDvETVHVVEFDIGEGVQLSQMIEAVAKRNKT---LKVTAIKWDVEEsdevapPHWRFEETKRQLQHHARSFGLNLKVEEIAIEdLVS 343
                  *********9999**************************765...******976555668899999************************96661445 PP

         GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleaklpre 278
                   ++  + r  ++E la n+++ l ++   +  ++    e+L+l k+l ++    ++++ + +  a++ n++ F   f   + +y al+ sle+++p++
  Pbr028237.1 344 LIKKANKRGGRREFLAFNSMVGLPHMR--RRRSRGLLMEFLRLAKDLLANsargIITFGDGDacAKReNDSGFSSFFDANVVHYEALLGSLESSFPSH 439
                  55555666666**************97..4444445799********87655669*****99765668****************************99 PP

         GRAS 279 s.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                    e+r+++E +++++ +++    e+ +   + ++l+ W      +G++  ++s k+ ++ak ++   +s g rv  e+ ++++l W++ pL+ v  W+
  Pbr028237.1 440 LgEARMVMELMFVAPYVSSQAWFEKWNEAREGRNLHPW------FGLEGRRVSRKMLMEAKEIVGADGSYGVRVGgENGNEMTLEWNSIPLIRVETWT 531
                  9899***************9999999977777778888......8*****************************967778888***********9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.701134510IPR005202Transcription factor GRAS
PfamPF035142.0E-35162531IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MMQSEMKFQT FWPCLNETNS TLDTNEYTEQ MGSSEFSSIF MPSDEFSETS GSFPFSTMFS  60
GEFEQLADCD PLLQATWMAE EEFPLELGGF ETNYLMGEIE NMYASDCDQL PSPQFFVEGN  120
GVWSPNSFVT SEASSMDVTS VQQSITLPRD EMEINNEVRI RHMLKAFGEA MEMGQRKLEE  180
VIMRCLLEKV NPLGQPLEPL ERLAFNLCQG VVDNQQGDYL KQESCKNYEA AFNLFYQIFP  240
FGRFAHYAAN TAILEAVPED VETVHVVEFD IGEGVQLSQM IEAVAKRNKT LKVTAIKWDV  300
EESDEVAPPH WRFEETKRQL QHHARSFGLN LKVEEIAIED LVSLIKKANK RGGRREFLAF  360
NSMVGLPHMR RRRSRGLLME FLRLAKDLLA NSARGIITFG DGDACAKREN DSGFSSFFDA  420
NVVHYEALLG SLESSFPSHL GEARMVMELM FVAPYVSSQA WFEKWNEARE GRNLHPWFGL  480
EGRRVSRKML MEAKEIVGAD GSYGVRVGGE NGNEMTLEWN SIPLIRVETW TNRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1124053088374GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337756.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLM5WLS00.0M5WLS0_PRUPE; Uncharacterized protein
STRINGPOPTR_0016s13050.11e-171(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-16GRAS family protein